// // Math.NET Numerics, part of the Math.NET Project // http://numerics.mathdotnet.com // http://github.com/mathnet/mathnet-numerics // // Copyright (c) 2009-2010 Math.NET // // Permission is hereby granted, free of charge, to any person // obtaining a copy of this software and associated documentation // files (the "Software"), to deal in the Software without // restriction, including without limitation the rights to use, // copy, modify, merge, publish, distribute, sublicense, and/or sell // copies of the Software, and to permit persons to whom the // Software is furnished to do so, subject to the following // conditions: // // The above copyright notice and this permission notice shall be // included in all copies or substantial portions of the Software. // // THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, // EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES // OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND // NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT // HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, // WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING // FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR // OTHER DEALINGS IN THE SOFTWARE. // namespace IStation.Numerics.Statistics.Mcmc { using System; /// /// Rejection sampling produces samples from distribution P by sampling from a proposal distribution Q /// and accepting/rejecting based on the density of P and Q. The density of P and Q don't need to /// to be normalized, but we do need that for each x, P(x) < Q(x). /// /// The type of samples this sampler produces. public class RejectionSampler : McmcSampler { /// /// Evaluates the density function of the sampling distribution. /// private readonly Density _pdfP; /// /// Evaluates the density function of the proposal distribution. /// private readonly Density _pdfQ; /// /// A function which samples from a proposal distribution. /// private readonly GlobalProposalSampler _proposal; /// /// Constructs a new rejection sampler using the default random number generator. /// /// The density of the distribution we want to sample from. /// The density of the proposal distribution. /// A method that samples from the proposal distribution. public RejectionSampler(Density pdfP, Density pdfQ, GlobalProposalSampler proposal) { _pdfP = pdfP; _pdfQ = pdfQ; _proposal = proposal; } /// /// Returns a sample from the distribution P. /// /// When the algorithms detects that the proposal /// distribution doesn't upper bound the target distribution. public override T Sample() { while (true) { // Get a sample from the proposal. T x = _proposal(); // Evaluate the density for proposal. double q = _pdfQ(x); // Evaluate the density for the target density. double p = _pdfP(x); // Sample a variable between 0.0 and proposal density. double u = RandomSource.NextDouble() * q; Samples++; if (q < p) { throw new ArgumentException("The sampler\'s proposal distribution is not upper bounding the target density."); } if (u < p) { Accepts++; return x; } } } } }